Package: protViz 0.7.9

protViz: Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Helps with quality checks, visualizations and analysis of mass spectrometry data, coming from proteomics experiments. The package is developed, tested and used at the Functional Genomics Center Zurich <https://fgcz.ch>. We use this package mainly for prototyping, teaching, and having fun with proteomics data. But it can also be used to do data analysis for small scale data sets.

Authors:Christian Panse [aut, cre], Jonas Grossmann [aut], Simon Barkow-Oesterreicher [ctb]

protViz_0.7.9.tar.gz
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protViz.pdf |protViz.html✨
protViz/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/cpanse/protviz/issues

On CRAN:

funmass-spectrometrypeptide-identificationproteomicsquantificationvisualization

47 exports 11 stars 2.51 score 1 dependencies 2 dependents 4 mentions 72 scripts 520 downloads

Last updated 9 months agofrom:fd0091823a. Checks:OK: 1 NOTE: 8. Indexed: yes.

Exports:aa2massas.data.frame.fragmentIonSetas.data.frame.mascotas.data.frame.psmSetas.psm.mascot_queryas.psmSetassignPlatePositionblockRandomcentroidde_novodefaultIondeisotoperFastafindMzfindMz.mascotfindMz.psmSetfindNNfindNN_fragmentIongenModinsertSamplesis.mascotis.mascot_queryis.psmis.psmSetiTRAQ2GroupAnalysislcmsmaplower_bound_mdpparentIonMasspeakplotpgImporterpgLFQaovpgLFQtNpqplot.mascotplot.mascot_queryplot.psmplot.psmSetpppppspsmPTM_MarkerFinderPTM_MarkerFinder_utilssrcsummary.cometdecoysummary.mascotsummary.psmSet

Dependencies:Rcpp